Following are publications I have contributed to since 2013.
Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis. Matamouros S, Hayden HS, Hager KR, Brittnacher MJ, Lachance K, Weiss EJ, Pope CE, Imhaus AF, McNally CP, Borenstein E, Hoffman LR, Miller SI. Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1605-1610. doi: 10.1073/pnas.1714373115. Epub 2018 Jan 29. PMID: 29378945
Comprehensive arrayed transposon mutant library of Klebsiella pneumoniae outbreak strain KPNIH1. Ramage B, Erolin R, Held K, Gasper J, Weiss E, Brittnacher M, Gallagher L, Manoil C. J Bacteriol. 2017 Jul 31. pii: JB.00352-17. doi: 10.1128/JB.00352-17. [Epub ahead of print] PMID: 28760848
The Accelerated Evolution of Lagging Strand Genes Is Independent of Sequence Context. Merrikh CN, Weiss E, Merrikh H. Genome Biol Evol. 2016 Dec 1;8(12):3696-3702. doi: 10.1093/gbe/evw274. PMID: 28039230
Human Diversity in a Cell Surface Receptor that Inhibits Autophagy. Chaudhary A, Leite M, Kulasekara BR, Altura MA, Ogahara C, Weiss E, Fu W, Blanc MP, O’Keeffe M, Terhorst C, Akey JM, Miller SI. Curr Biol. 2016 Jul 25;26(14):1791-801. doi: 10.1016/j.cub.2016.05.003. Epub 2016 Jun 23. PMID: 27345162
GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis. Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI. PLoS One. 2016 Jul 8;11(7):e0158897. doi: 10.1371/journal.pone.0158897. eCollection 2016. PMID: 27391011
Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to \ Loss of Fitness under Nitrosative and Oxidative Stress. Hayden HS, Matamouros S, Hager KR, Brittnacher MJ, Rohmer L, Radey MC, Weiss EJ, Kim KB, Jacobs MA, Sims-Day EH, Yue M, Zaidi MB, Schifferli DM, Manning SD, Walson JL, Miller SI. MBio. 2016 Mar 8;7(2):e00154. doi: 10.1128/mBio.00154-16. PMID: 26956590
Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii. Gallagher LA, Ramage E, Weiss EJ, Radey M, Hayden HS, Held KG, Huse HK, Zurawski DV, Brittnacher MJ, Manoil C. J Bacteriol. 2015 Jun 15;197(12):2027-35. doi: 10.1128/JB.00131-15. Epub 2015 Apr 6. PMID: 25845845
An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis. Million-Weaver S, Samadpour AN, Moreno-Habel DA, Nugent P, Brittnacher MJ, Weiss E, Hayden HS, Miller SI, Liachko I, Merrikh H. Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):E1096-105. doi: 10.1073/pnas.1416651112. Epub 2015 Feb 23. PMID: 25713353
Genomic analysis of the emergence of 20th century epidemic dysentery. Rohmer L, Jacobs MA, Brittnacher MJ, Fong C, Hayden HS, Hocquet D, Weiss EJ, Radey M, Germani Y, Talukder KA, Hager AJ, Kemner JM, Sims-Day EH, Matamouros S, Hager KR, Miller SI. BMC Genomics. 2014 May 10;15:355. doi: 10.1186/1471-2164-15-355. PMID: 24886041
Sequence-defined transposon mutant library of Burkholderia thailandensis.
Gallagher LA, Ramage E, Patrapuvich R, Weiss E, Brittnacher M, Manoil C.
MBio. 2013 Nov 5;4(6):e00604-13. doi: 10.1128/mBio.00604-13.
PMID: 24194535